/EXTERNAL KNIH/methylation/K006242_1_lane_gembs

BACK

SAMPLE K006242_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26618971 21034052 79.02 %
NonRefCpG 409298 161028 39.34 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006242_1_lane_gembs_coverage_refCpG.png ./IMG//K006242_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006242_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006242_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006242_1_lane_gembs_quality_refcpg.png ./IMG//K006242_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006242_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5019441 9.88 % 3846624 8.80 % 176661 24.53 % 35868 9.00 %
Intermediate (0.3-0.7) 7180507 14.13 % 5091935 11.65 % 153697 21.34 % 62551 15.69 %
Methylated (0.7-1) 38602997 75.99 % 34785935 79.56 % 389935 54.14 % 300182 75.31 %
Median Methylation 0.870 0.880 0.740 0.870