/EXTERNAL KNIH/K006243_1_lane_gembs

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SAMPLE K006243_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1299887106 100.00 % 649943553 100.00 % 649943553 100.00 %
General Reads 1261303916 97.03 % 633407163 97.46 % 627896753 96.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6371359 0.49 % 3207625 0.49 % 3163734 0.49 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32211831 2.48 % 13328765 2.05 % 18883066 2.91 %
Bisulfite_reads C2T 643151117 49.48 % 322969735 49.69 % 320181382 49.26 %
Bisulfite_reads G2A 624524158 48.04 % 313645053 48.26 % 310879105 47.83 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 389219387
Average Unique 59.89 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70171290018 35.51 % 27356901245 27.69 % 42814388773 43.34 %
Base Counts Overall C 27959686916 14.15 % 4460031098 4.51 % 23499655818 23.79 %
Base Counts Overall G 29650930615 15.01 % 24034159179 24.33 % 5616771436 5.69 %
Base Counts Overall T 68458411376 34.65 % 42274417758 42.79 % 26183993618 26.50 %
Base Counts Overall N 1342521187 0.68 % 665910776 0.67 % 676610411 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9703659710043279
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 445476493



Mapping Quality

Mapping Quality Histogram
K006243_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006243_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20150004.Bisulfite-Seq.DNA_Methylation.EGAX00001529775.IPS04_X