/EXTERNAL KNIH/K006243_1_lane_gembs/KEP20150004.Bisulfite-Seq.DNA_Methylation.EGAX00001529775.IPS04_X

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SAMPLE K006243_1_lane_gembs LANE KEP20150004.Bisulfite-Seq.DNA_Methylation.EGAX00001529775.IPS04_X

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1299887106	100.00 %	649943553	100.00 %	649943553	100.00 %
General Reads	1261303916	97.03 %	633407163	97.46 %	627896753	96.61 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	6371359	0.49 %	3207625	0.49 %	3163734	0.49 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	32211831	2.48 %	13328765	2.05 %	18883066	2.91 %
Bisulfite_reads C2T	643151117	49.48 %	322969735	49.69 %	320181382	49.26 %
Bisulfite_reads G2A	624524158	48.04 %	313645053	48.26 %	310879105	47.83 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	389219387
Average Unique	59.89 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	70171290018	35.51 %	27356901245	27.69 %	42814388773	43.34 %
Base Counts Overall C	27959686916	14.15 %	4460031098	4.51 %	23499655818	23.79 %
Base Counts Overall G	29650930615	15.01 %	24034159179	24.33 %	5616771436	5.69 %
Base Counts Overall T	68458411376	34.65 %	42274417758	42.79 %	26183993618	26.50 %
Base Counts Overall N	1342521187	0.68 %	665910776	0.67 %	676610411	0.68 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9703659710043279
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	445476493

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
151	649943553
151	649943553

Insert Size Plot

Insert Size Histogram