/EXTERNAL KNIH/mapping_coverage/K006243_1_lane_gembs
BACK
SAMPLE K006243_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1139091017 |
100% |
153265403918 |
100% |
| Mapped |
1127059843 |
98.94 % |
151448696644 |
98.81 % |
| Passed |
527313500 |
46.29 % |
60886998851 |
39.73 % |
| NotPassed |
599746343 |
52.65 % |
90561697793 |
59.09 % |
| |
|
|
|
|
| LowMAPQ |
443659232 |
38.95 % |
66992544032 |
43.71 % |
| MateUnmapped |
12031174 |
1.06 % |
1816707274 |
1.19 % |
| Duplicate |
126952303 |
11.15 % |
19169797753 |
12.51 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
163066 |
0.01 % |
24622966 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28971742 |
2.54 % |
4374733042 |
2.85 % |
| Unmapped |
12031174 |
1.06 % |
1816707274 |
1.19 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79467187968 |
100% |
| Passed |
57507830862 |
72.37 % |
| Trimmed |
2169769054 |
2.73 % |
| Clipped |
952601667 |
1.20 % |
| Overlapping |
17627587450 |
22.18 % |
| LowQuality |
1209398935 |
1.52 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |