/EXTERNAL KNIH/methylation/K006243_1_lane_gembs

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SAMPLE K006243_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26567634 21024219 79.13 %
NonRefCpG 389522 161664 41.50 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006243_1_lane_gembs_coverage_refCpG.png ./IMG//K006243_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006243_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006243_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006243_1_lane_gembs_quality_refcpg.png ./IMG//K006243_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006243_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5030306 9.92 % 3924964 8.98 % 147876 21.69 % 30086 7.72 %
Intermediate (0.3-0.7) 7237514 14.28 % 5156753 11.79 % 144732 21.23 % 59569 15.28 %
Methylated (0.7-1) 38419695 75.80 % 34643514 79.23 % 389089 57.08 % 300112 77.00 %
Median Methylation 0.860 0.870 0.770 0.870