/EXTERNAL KNIH/K006246_1_lane_gembs

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SAMPLE K006246_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1205857994 100.00 % 602928997 100.00 % 602928997 100.00 %
General Reads 1165591273 96.66 % 591118597 98.04 % 574472676 95.28 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1097312 0.09 % 558200 0.09 % 539112 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 39169409 3.25 % 11252200 1.87 % 27917209 4.63 %
Bisulfite_reads C2T 586620752 48.65 % 297299155 49.31 % 289321597 47.99 %
Bisulfite_reads G2A 580067833 48.10 % 294377642 48.82 % 285690191 47.38 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 283483053
Average Unique 47.02 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 62913586105 34.32 % 25102202429 27.39 % 37811383676 41.26 %
Base Counts Overall C 27934821011 15.24 % 4984161975 5.44 % 22950659036 25.04 %
Base Counts Overall G 30451335894 16.61 % 23565401419 25.71 % 6885934475 7.51 %
Base Counts Overall T 60761120879 33.15 % 37381126823 40.79 % 23379994056 25.51 %
Base Counts Overall N 1229551199 0.67 % 612314898 0.67 % 617236301 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9599662772040868
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 330194586



Mapping Quality

Mapping Quality Histogram
K006246_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006246_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20160001.Bisulfite-Seq.DNA_Methylation.EGAX00001573563.SMC01_WGBS