/EXTERNAL KNIH/mapping_coverage/K006246_1_lane_gembs
BACK
SAMPLE K006246_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1025869698 |
100% |
143957322736 |
100% |
| Mapped |
1000753752 |
97.55 % |
140164814890 |
97.37 % |
| Passed |
275541851 |
26.86 % |
30657817839 |
21.30 % |
| NotPassed |
725211901 |
70.69 % |
109506997051 |
76.07 % |
| |
|
|
|
|
| LowMAPQ |
536682522 |
52.31 % |
81039060822 |
56.29 % |
| MateUnmapped |
25115946 |
2.45 % |
3792507846 |
2.63 % |
| Duplicate |
152402738 |
14.86 % |
23012813438 |
15.99 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
251164 |
0.02 % |
37925764 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35875477 |
3.50 % |
5417197027 |
3.76 % |
| Unmapped |
25115946 |
2.45 % |
3792507846 |
2.63 % |
Base Level Counts
| Bases |
# |
% |
| Total |
41306383408 |
100% |
| Passed |
28251299718 |
68.39 % |
| Trimmed |
1057411765 |
2.56 % |
| Clipped |
1057979286 |
2.56 % |
| Overlapping |
9590586283 |
23.22 % |
| LowQuality |
1349106356 |
3.27 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |