/EXTERNAL KNIH/K006251_1_lane_gembs/KEP20160006.Bisulfite-Seq.DNA_Methylation.EGAX00001573566.SMC06_WGBS

BACK

SAMPLE K006251_1_lane_gembs LANE KEP20160006.Bisulfite-Seq.DNA_Methylation.EGAX00001573566.SMC06_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1097355886 100.00 % 548677943 100.00 % 548677943 100.00 %
General Reads 1023279688 93.25 % 527059267 96.06 % 496220421 90.44 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10002225 0.91 % 5149034 0.94 % 4853191 0.88 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 64073973 5.84 % 16469642 3.00 % 47604331 8.68 %
Bisulfite_reads C2T 523164191 47.67 % 269288384 49.08 % 253875807 46.27 %
Bisulfite_reads G2A 510117722 46.49 % 262919917 47.92 % 247197805 45.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 187069421
Average Unique 34.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57088801469 34.23 % 22982083552 27.56 % 34106717917 40.90 %
Base Counts Overall C 25226362522 15.12 % 5858653145 7.02 % 19367709377 23.22 %
Base Counts Overall G 28897231622 17.32 % 20454269604 24.53 % 8442962018 10.12 %
Base Counts Overall T 54458866450 32.65 % 33543191201 40.22 % 20915675249 25.08 %
Base Counts Overall N 1126832609 0.68 % 560849834 0.67 % 565982775 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9200372078020996
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 226034083



Mapping Quality

Mapping Quality Histogram
KEP20160006.Bisulfite-Seq.DNA_Methylation.EGAX00001573566.SMC06_WGBS.mapq.png



Read Length

Read Length Reads
151 548677943
151 548677943



Insert Size Plot

Insert Size Histogram
KEP20160006.Bisulfite-Seq.DNA_Methylation.EGAX00001573566.SMC06_WGBS.isize.png