/EXTERNAL KNIH/K006253_1_lane_gembs/KEP20160008.Bisulfite-Seq.DNA_Methylation.EGAX00001573568.SMC08_WGBS

BACK

SAMPLE K006253_1_lane_gembs LANE KEP20160008.Bisulfite-Seq.DNA_Methylation.EGAX00001573568.SMC08_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1086445398 100.00 % 543222699 100.00 % 543222699 100.00 %
General Reads 1024698333 94.32 % 533497679 98.21 % 491200654 90.42 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1180305 0.11 % 616799 0.11 % 563506 0.10 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 60566760 5.57 % 9108221 1.68 % 51458539 9.47 %
Bisulfite_reads C2T 516771217 47.57 % 268797906 49.48 % 247973311 45.65 %
Bisulfite_reads G2A 509107421 46.86 % 265316572 48.84 % 243790849 44.88 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 237336950
Average Unique 43.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57184453093 34.63 % 22735331260 27.53 % 34449121833 41.72 %
Base Counts Overall C 24415047010 14.78 % 4228672438 5.12 % 20186374572 24.45 %
Base Counts Overall G 26408125098 15.99 % 20739403740 25.12 % 5668721358 6.87 %
Base Counts Overall T 56004944515 33.91 % 34306523632 41.55 % 21698420883 26.28 %
Base Counts Overall N 1127130780 0.68 % 559919178 0.68 % 567211602 0.69 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9598954587709241
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 276989825



Mapping Quality

Mapping Quality Histogram
KEP20160008.Bisulfite-Seq.DNA_Methylation.EGAX00001573568.SMC08_WGBS.mapq.png



Read Length

Read Length Reads
151 543222699
151 543222699



Insert Size Plot

Insert Size Histogram
KEP20160008.Bisulfite-Seq.DNA_Methylation.EGAX00001573568.SMC08_WGBS.isize.png