/EXTERNAL KNIH/mapping_coverage/K006253_1_lane_gembs
BACK
SAMPLE K006253_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
926402522 |
100% |
128890785576 |
100% |
| Mapped |
878504765 |
94.83 % |
121658224269 |
94.39 % |
| Passed |
270193167 |
29.17 % |
29803172971 |
23.12 % |
| NotPassed |
608311598 |
65.66 % |
91855051298 |
71.27 % |
| |
|
|
|
|
| LowMAPQ |
456532236 |
49.28 % |
68936367636 |
53.48 % |
| MateUnmapped |
47897757 |
5.17 % |
7232561307 |
5.61 % |
| Duplicate |
106653910 |
11.51 % |
16104740410 |
12.49 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
178238 |
0.02 % |
26913938 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
44947214 |
4.85 % |
6787029314 |
5.27 % |
| Unmapped |
47897757 |
5.17 % |
7232561307 |
5.61 % |
Base Level Counts
| Bases |
# |
% |
| Total |
40576228193 |
100% |
| Passed |
26943416449 |
66.40 % |
| Trimmed |
1030320306 |
2.54 % |
| Clipped |
898480370 |
2.21 % |
| Overlapping |
9874574852 |
24.34 % |
| LowQuality |
1829436216 |
4.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |