/EXTERNAL KNIH/methylation/K006253_1_lane_gembs

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SAMPLE K006253_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25314648 10258400 40.52 %
NonRefCpG 500508 70697 14.13 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006253_1_lane_gembs_coverage_refCpG.png ./IMG//K006253_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006253_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006253_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006253_1_lane_gembs_quality_refcpg.png ./IMG//K006253_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006253_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8763193 19.74 % 4019263 15.98 % 256601 32.25 % 40016 17.38 %
Intermediate (0.3-0.7) 13246358 29.83 % 5911610 23.50 % 254419 31.98 % 62699 27.23 %
Methylated (0.7-1) 22391660 50.43 % 15224683 60.52 % 284652 35.77 % 127532 55.39 %
Median Methylation 0.700 0.780 0.530 0.740