/EXTERNAL KNIH/K006254_1_lane_gembs/KEP20150007.Bisulfite-Seq.DNA_Methylation.EGAX00001573569.SMC09_WGBS

BACK

SAMPLE K006254_1_lane_gembs LANE KEP20150007.Bisulfite-Seq.DNA_Methylation.EGAX00001573569.SMC09_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1399578540 100.00 % 699789270 100.00 % 699789270 100.00 %
General Reads 1355990067 96.89 % 687815829 98.29 % 668174238 95.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7782496 0.56 % 3954657 0.57 % 3827839 0.55 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 35805977 2.56 % 8018784 1.15 % 27787193 3.97 %
Bisulfite_reads C2T 691734355 49.42 % 350830993 50.13 % 340903362 48.72 %
Bisulfite_reads G2A 672038208 48.02 % 340939493 48.72 % 331098715 47.31 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 375208697
Average Unique 53.62 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74637217500 35.08 % 29516814591 27.75 % 45120402909 42.42 %
Base Counts Overall C 29883308197 14.05 % 4736519184 4.45 % 25146789013 23.64 %
Base Counts Overall G 33199842094 15.61 % 26051092617 24.49 % 7148749477 6.72 %
Base Counts Overall T 73584095028 34.59 % 45352564701 42.64 % 28231530327 26.54 %
Base Counts Overall N 1431475261 0.67 % 710977947 0.67 % 720497314 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.952704519655755
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 436923643



Mapping Quality

Mapping Quality Histogram
KEP20150007.Bisulfite-Seq.DNA_Methylation.EGAX00001573569.SMC09_WGBS.mapq.png



Read Length

Read Length Reads
151 699789270
151 699789270



Insert Size Plot

Insert Size Histogram
KEP20150007.Bisulfite-Seq.DNA_Methylation.EGAX00001573569.SMC09_WGBS.isize.png