/EXTERNAL KNIH/methylation/K006254_1_lane_gembs

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SAMPLE K006254_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26380736 18066265 68.48 %
NonRefCpG 426028 140656 33.02 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006254_1_lane_gembs_coverage_refCpG.png ./IMG//K006254_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006254_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006254_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006254_1_lane_gembs_quality_refcpg.png ./IMG//K006254_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006254_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8358707 16.63 % 5980038 14.85 % 213814 28.63 % 57002 14.73 %
Intermediate (0.3-0.7) 13612361 27.08 % 9442651 23.45 % 222712 29.83 % 105810 27.35 %
Methylated (0.7-1) 28291271 56.29 % 24849337 61.70 % 310194 41.54 % 224130 57.92 %
Median Methylation 0.750 0.790 0.600 0.760