/EXTERNAL KNIH/K006255_1_lane_gembs/KEP20160009.Bisulfite-Seq.DNA_Methylation.EGAX00001573570.ADMSC01_WGBS

BACK

SAMPLE K006255_1_lane_gembs LANE KEP20160009.Bisulfite-Seq.DNA_Methylation.EGAX00001573570.ADMSC01_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1270526914 100.00 % 635263457 100.00 % 635263457 100.00 %
General Reads 1233600857 97.09 % 624246290 98.27 % 609354567 95.92 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1006699 0.08 % 510939 0.08 % 495760 0.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 35919358 2.83 % 10506228 1.65 % 25413130 4.00 %
Bisulfite_reads C2T 623006235 49.04 % 315100277 49.60 % 307905958 48.47 %
Bisulfite_reads G2A 611601321 48.14 % 309656952 48.74 % 301944369 47.53 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 312896760
Average Unique 49.25 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 66635725720 34.50 % 26489865176 27.43 % 40145860544 41.58 %
Base Counts Overall C 29242596677 15.14 % 5081754123 5.26 % 24160842554 25.02 %
Base Counts Overall G 31516325357 16.32 % 24727710175 25.61 % 6788615182 7.03 %
Base Counts Overall T 64428616898 33.36 % 39615481721 41.03 % 24813135177 25.70 %
Base Counts Overall N 1296826276 0.67 % 645234269 0.67 % 651592007 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9638336520962917
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 360558731



Mapping Quality

Mapping Quality Histogram
KEP20160009.Bisulfite-Seq.DNA_Methylation.EGAX00001573570.ADMSC01_WGBS.mapq.png



Read Length

Read Length Reads
151 635263457
151 635263457



Insert Size Plot

Insert Size Histogram
KEP20160009.Bisulfite-Seq.DNA_Methylation.EGAX00001573570.ADMSC01_WGBS.isize.png