/EXTERNAL KNIH/K006257_1_lane_gembs

BACK

SAMPLE K006257_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1045334638 100.00 % 522667319 100.00 % 522667319 100.00 %
General Reads 997891239 95.46 % 514920639 98.52 % 482970600 92.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1185224 0.11 % 613309 0.12 % 571915 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 46258175 4.43 % 7133371 1.36 % 39124804 7.49 %
Bisulfite_reads C2T 501266081 47.95 % 258439108 49.45 % 242826973 46.46 %
Bisulfite_reads G2A 497810382 47.62 % 257094840 49.19 % 240715542 46.06 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 241222468
Average Unique 46.15 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 55195300322 34.74 % 21984736462 27.67 % 33210563860 41.80 %
Base Counts Overall C 23538315906 14.81 % 4068015009 5.12 % 19470300897 24.51 %
Base Counts Overall G 25366598953 15.96 % 20033544257 25.22 % 5333054696 6.71 %
Base Counts Overall T 53713704637 33.81 % 32822673608 41.31 % 20891031029 26.30 %
Base Counts Overall N 1076945158 0.68 % 536463152 0.68 % 540482006 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9605372191438416
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 280670038



Mapping Quality

Mapping Quality Histogram
K006257_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006257_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20160008.Bisulfite-Seq.DNA_Methylation.EGAX00001573572.ADMSC03_WGBS