/EXTERNAL KNIH/mapping_coverage/K006257_1_lane_gembs
BACK
SAMPLE K006257_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
895396851 |
100% |
124423235337 |
100% |
| Mapped |
858383322 |
95.87 % |
118834192458 |
95.51 % |
| Passed |
269793398 |
30.13 % |
29957113934 |
24.08 % |
| NotPassed |
588589924 |
65.74 % |
88877078524 |
71.43 % |
| |
|
|
|
|
| LowMAPQ |
438915744 |
49.02 % |
66276277344 |
53.27 % |
| MateUnmapped |
37013529 |
4.13 % |
5589042879 |
4.49 % |
| Duplicate |
110632504 |
12.36 % |
16705508104 |
13.43 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
161294 |
0.02 % |
24355394 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
38880382 |
4.34 % |
5870937682 |
4.72 % |
| Unmapped |
37013529 |
4.13 % |
5589042879 |
4.49 % |
Base Level Counts
| Bases |
# |
% |
| Total |
40520079296 |
100% |
| Passed |
27162944903 |
67.04 % |
| Trimmed |
1035859355 |
2.56 % |
| Clipped |
878523511 |
2.17 % |
| Overlapping |
9684441851 |
23.90 % |
| LowQuality |
1758309676 |
4.34 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |