/EXTERNAL KNIH/methylation/K006257_1_lane_gembs

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SAMPLE K006257_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25263264 10453193 41.38 %
NonRefCpG 500725 72207 14.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006257_1_lane_gembs_coverage_refCpG.png ./IMG//K006257_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006257_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006257_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006257_1_lane_gembs_quality_refcpg.png ./IMG//K006257_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006257_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8789597 19.90 % 4093492 16.17 % 253371 32.03 % 39560 17.16 %
Intermediate (0.3-0.7) 12926385 29.27 % 5776040 22.81 % 251899 31.85 % 61787 26.80 %
Methylated (0.7-1) 22451558 50.83 % 15449433 61.02 % 285695 36.12 % 129232 56.05 %
Median Methylation 0.700 0.790 0.540 0.750