/EXTERNAL KNIH/K006258_1_lane_gembs

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SAMPLE K006258_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1100297066 100.00 % 550148533 100.00 % 550148533 100.00 %
General Reads 1040771603 94.59 % 535391791 97.32 % 505379812 91.86 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6869176 0.62 % 3537564 0.64 % 3331612 0.61 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 52656287 4.79 % 11219178 2.04 % 41437109 7.53 %
Bisulfite_reads C2T 530846581 48.25 % 272945585 49.61 % 257900996 46.88 %
Bisulfite_reads G2A 516794198 46.97 % 265983770 48.35 % 250810428 45.59 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 231810596
Average Unique 42.14 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 58554898417 35.01 % 23484298539 28.08 % 35070599878 41.94 %
Base Counts Overall C 24278018571 14.52 % 4452288553 5.32 % 19825730018 23.71 %
Base Counts Overall G 27307621069 16.33 % 20521784219 24.54 % 6785836850 8.11 %
Base Counts Overall T 55979016203 33.47 % 34603848776 41.38 % 21375167427 25.56 %
Base Counts Overall N 1125599772 0.67 % 560356929 0.67 % 565242843 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9443300614369995
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 272530970



Mapping Quality

Mapping Quality Histogram
K006258_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006258_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20160006.Bisulfite-Seq.DNA_Methylation.EGAX00001573573.ADMSC04_WGBS