/EXTERNAL KNIH/mapping_coverage/K006258_1_lane_gembs
BACK
SAMPLE K006258_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
970415452 |
100% |
132514315886 |
100% |
| Mapped |
932808455 |
96.12 % |
126835659339 |
95.71 % |
| Passed |
313309348 |
32.29 % |
33291294182 |
25.12 % |
| NotPassed |
619499107 |
63.84 % |
93544365157 |
70.59 % |
| |
|
|
|
|
| LowMAPQ |
496130578 |
51.13 % |
74915717278 |
56.53 % |
| MateUnmapped |
37606997 |
3.88 % |
5678656547 |
4.29 % |
| Duplicate |
77795307 |
8.02 % |
11747091357 |
8.86 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
172436 |
0.02 % |
26037836 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
45400786 |
4.68 % |
6855518686 |
5.17 % |
| Unmapped |
37606997 |
3.88 % |
5678656547 |
4.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
47119499566 |
100% |
| Passed |
29928024756 |
63.52 % |
| Trimmed |
1174265700 |
2.49 % |
| Clipped |
1143293488 |
2.43 % |
| Overlapping |
12684911896 |
26.92 % |
| LowQuality |
2189003726 |
4.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |