/EXTERNAL KNIH/methylation/K006258_1_lane_gembs

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SAMPLE K006258_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25760632 10946828 42.49 %
NonRefCpG 713228 80989 11.36 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006258_1_lane_gembs_coverage_refCpG.png ./IMG//K006258_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006258_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006258_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006258_1_lane_gembs_quality_refcpg.png ./IMG//K006258_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006258_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8514891 18.32 % 3769143 13.87 % 517219 42.97 % 77112 23.70 %
Intermediate (0.3-0.7) 13825771 29.75 % 6529972 24.03 % 363077 30.16 % 95292 29.29 %
Methylated (0.7-1) 24129297 51.92 % 16877736 62.10 % 323492 26.87 % 152957 47.01 %
Median Methylation 0.710 0.790 0.390 0.660