/EXTERNAL DEEP/K008968_K008969_K008970_3_lane_gembs/51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612218.52

BACK

SAMPLE K008968_K008969_K008970_3_lane_gembs LANE 51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612218.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 401113362 100.00 % 200556681 100.00 % 200556681 100.00 %
General Reads 392438542 97.84 % 197793287 98.62 % 194645255 97.05 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 98082 0.02 % 49576 0.02 % 48506 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8576738 2.14 % 2713818 1.35 % 5862920 2.92 %
Bisulfite_reads C2T 201958731 50.35 % 101763895 50.74 % 100194836 49.96 %
Bisulfite_reads G2A 190577893 47.51 % 96078968 47.91 % 94498925 47.12 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 142220681
Average Unique 70.91 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15127912783 36.98 % 5836239984 28.53 % 9291672799 45.42 %
Base Counts Overall C 5120026742 12.51 % 468890612 2.29 % 4651136130 22.74 %
Base Counts Overall G 5379913495 13.15 % 4827862704 23.60 % 552050791 2.70 %
Base Counts Overall T 14698015627 35.92 % 9093875373 44.45 % 5604140254 27.40 %
Base Counts Overall N 587694277 1.44 % 229912789 1.12 % 357781488 1.75 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9815701731202974
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 165264969



Mapping Quality

Mapping Quality Histogram
51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612218.52.mapq.png



Read Length

Read Length Reads
101 200556681
101 200556681



Insert Size Plot

Insert Size Histogram
51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612218.52.isize.png