/EXTERNAL DEEP/K008968_K008969_K008970_3_lane_gembs/51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612297.52

BACK

SAMPLE K008968_K008969_K008970_3_lane_gembs LANE 51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612297.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 328463670 100.00 % 164231835 100.00 % 164231835 100.00 %
General Reads 321415661 97.85 % 162322636 98.84 % 159093025 96.87 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1103984 0.34 % 557818 0.34 % 546166 0.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5944025 1.81 % 1351381 0.82 % 4592644 2.80 %
Bisulfite_reads C2T 165356511 50.34 % 83488128 50.84 % 81868383 49.85 %
Bisulfite_reads G2A 157163134 47.85 % 79392326 48.34 % 77770808 47.35 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 133384374
Average Unique 81.22 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13088377649 39.07 % 5782426990 34.52 % 7305950659 43.61 %
Base Counts Overall C 3335737018 9.96 % 120258969 0.72 % 3215478049 19.19 %
Base Counts Overall G 3413797815 10.19 % 3304231421 19.72 % 109566394 0.65 %
Base Counts Overall T 13083989717 39.05 % 7380458275 44.06 % 5703531442 34.05 %
Base Counts Overall N 581392141 1.74 % 164271515 0.98 % 417120626 2.49 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9959737788216639
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 152065863



Mapping Quality

Mapping Quality Histogram
51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612297.52.mapq.png



Read Length

Read Length Reads
101 164231835
101 164231835



Insert Size Plot

Insert Size Histogram
51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612297.52.isize.png