/EXTERNAL DEEP/K008968_K008969_K008970_3_lane_gembs/51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612352.52

BACK

SAMPLE K008968_K008969_K008970_3_lane_gembs LANE 51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612352.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 325552826 100.00 % 162776413 100.00 % 162776413 100.00 %
General Reads 319802241 98.23 % 160995645 98.91 % 158806596 97.56 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1103392 0.34 % 555713 0.34 % 547679 0.34 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4647193 1.43 % 1225055 0.75 % 3422138 2.10 %
Bisulfite_reads C2T 164593792 50.56 % 82843354 50.89 % 81750438 50.22 %
Bisulfite_reads G2A 156311841 48.01 % 78708004 48.35 % 77603837 47.68 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 133174845
Average Unique 81.81 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13011980517 39.19 % 5721573688 34.46 % 7290406829 43.91 %
Base Counts Overall C 3335304069 10.04 % 119324824 0.72 % 3215979245 19.37 %
Base Counts Overall G 3393582982 10.22 % 3287820106 19.80 % 105762876 0.64 %
Base Counts Overall T 12988437259 39.11 % 7311301498 44.04 % 5677135761 34.19 %
Base Counts Overall N 477083425 1.44 % 163174010 0.98 % 313909415 1.89 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9960053653517625
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 151625218



Mapping Quality

Mapping Quality Histogram
51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612352.52.mapq.png



Read Length

Read Length Reads
101 162776413
101 162776413



Insert Size Plot

Insert Size Histogram
51_Hm1b.Bisulfite-Seq.DNA_methylation.EGAX00001612352.52.isize.png