/EXTERNAL DEEP/mapping_coverage/K008968_K008969_K008970_3_lane_gembs
BACK
SAMPLE K008968_K008969_K008970_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1009615889 |
100% |
94955657642 |
100% |
| Mapped |
996846099 |
98.74 % |
93665908852 |
98.64 % |
| Passed |
771412083 |
76.41 % |
70897073236 |
74.66 % |
| NotPassed |
225434016 |
22.33 % |
22768835616 |
23.98 % |
| |
|
|
|
|
| LowMAPQ |
164914584 |
16.33 % |
16656372984 |
17.54 % |
| MateUnmapped |
12769790 |
1.26 % |
1289748790 |
1.36 % |
| Duplicate |
24149482 |
2.39 % |
2439097682 |
2.57 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
17196 |
0.00 % |
1736796 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
36352754 |
3.60 % |
3671628154 |
3.87 % |
| Unmapped |
12769790 |
1.26 % |
1289748790 |
1.36 % |
Base Level Counts
| Bases |
# |
% |
| Total |
77893072439 |
100% |
| Passed |
66128732341 |
84.90 % |
| Trimmed |
3483990989 |
4.47 % |
| Clipped |
207268889 |
0.27 % |
| Overlapping |
6788730314 |
8.72 % |
| LowQuality |
1284349906 |
1.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |