/EXTERNAL DEEP/methylation/K008968_K008969_K008970_3_lane_gembs
BACK
SAMPLE K008968_K008969_K008970_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26514298 |
16630134 |
62.72 % |
| NonRefCpG |
317075 |
134854 |
42.53 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7199669 |
14.06 % |
3777503 |
9.68 % |
125797 |
21.61 % |
42199 |
11.72 % |
| Intermediate (0.3-0.7) |
17149993 |
33.48 % |
11871908 |
30.41 % |
199082 |
34.20 % |
117775 |
32.71 % |
| Methylated (0.7-1) |
26869916 |
52.46 % |
23386161 |
59.91 % |
257187 |
44.19 % |
200101 |
55.57 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.710 |
|
0.760 |
|
0.640 |
|
0.730 |
|