/EXTERNAL DEEP/K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs/51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612155.51

BACK

SAMPLE K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs LANE 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612155.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 284234648 100.00 % 142117324 100.00 % 142117324 100.00 %
General Reads 281964396 99.20 % 141131334 99.31 % 140833062 99.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 2270252 0.80 % 985990 0.69 % 1284262 0.90 %
Bisulfite_reads C2T 146586563 51.57 % 73370017 51.63 % 73216546 51.52 %
Bisulfite_reads G2A 135377833 47.63 % 67761317 47.68 % 67616516 47.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 68386775
Average Unique 48.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 9006498649 38.55 % 3303593409 29.38 % 5702905240 47.05 %
Base Counts Overall C 2712352811 11.61 % 102825048 0.91 % 2609527763 21.53 %
Base Counts Overall G 2571803219 11.01 % 2472515083 21.99 % 99288136 0.82 %
Base Counts Overall T 8771212992 37.54 % 5222027109 46.45 % 3549185883 29.28 %
Base Counts Overall N 302226287 1.29 % 142237056 1.27 % 159989231 1.32 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 87723529



Mapping Quality

Mapping Quality Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612155.51.mapq.png



Read Length

Read Length Reads
82 1218493
95 2855502
33 424376
80 1444082
66 1453240
98 23643274
23 329450
53 1284546
65 1446780
20 304567
97 20148867
27 321505
25 319072
76 1467257
34 428728
30 334780
49 1237276
59 1377180
86 1261388
51 1233969
79 1501843
50 1222704
89 2903560
71 1431745
41 839150
62 1430365
67 1501693
44 1068495
37 585507
92 595020
60 1389664
31 376841
48 1196019
21 330924
22 295328
52 1281731
77 1505309
87 1465494
28 322174
70 1454321
74 1444488
42 917725
90 6594820
78 1460348
69 1475879
56 1386551
39 720930
35 460506
96 5321251
84 1039767
40 759641
54 1336190
58 1378913
73 1413301
46 1174198
91 3749956
55 1373370
63 1401571
47 1220364
45 1108977
43 994703
36 530162
83 964386
29 332370
24 321428
61 1372339
64 1426075
32 347037
94 1768357
75 1483748
38 659077
26 343449
93 1870236
88 1941158
57 1411164
81 1335582
68 1454562
72 1445592
85 1144934
82 1176579
95 2952058
33 111366
80 1193227
99 46133278
66 1218283
98 16040434
23 34972
53 1056894
65 1222779
20 32317
97 6379468
27 60998
25 46614
76 1238737
34 157860
30 77919
49 993171
59 1141454
86 1131466
51 995464
79 1239904
50 979035
89 1200373
71 1183577
41 597841
62 1191628
67 1271867
44 822763
37 355105
92 1176169
60 1159232
31 82806
48 970807
21 31856
22 33378
52 1048496
77 1281682
87 1172736
28 69110
70 1223080
74 1217144
42 686092
90 1250744
78 1237070
69 1244319
56 1157871
39 475933
35 212428
96 6301250
84 1109631
40 531108
54 1110081
58 1151431
73 1178859
46 930350
91 1230022
55 1148648
63 1172327
47 986450
45 881642
43 756671
36 281025
83 1097380
29 73055
24 41421
61 1138525
64 1203334
32 95788
94 1592798
75 1251257
38 417104
26 55321
93 1333030
88 1159907
57 1180449
81 1175557
68 1223148
72 1211611
85 1129760



Insert Size Plot

Insert Size Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612155.51.isize.png