/EXTERNAL DEEP/K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs/51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612373.51

BACK

SAMPLE K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs LANE 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612373.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 350815286 100.00 % 175407643 100.00 % 175407643 100.00 %
General Reads 344017554 98.06 % 172273548 98.21 % 171744006 97.91 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 431 0.00 % 224 0.00 % 207 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6797301 1.94 % 3133871 1.79 % 3663430 2.09 %
Bisulfite_reads C2T 178781800 50.96 % 89526097 51.04 % 89255703 50.88 %
Bisulfite_reads G2A 165236185 47.10 % 82747675 47.17 % 82488510 47.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 84056671
Average Unique 47.92 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11138601689 38.49 % 4106687849 29.48 % 7031913840 46.86 %
Base Counts Overall C 3381939789 11.69 % 158709638 1.14 % 3223230151 21.48 %
Base Counts Overall G 3182847582 11.00 % 3049209240 21.89 % 133638342 0.89 %
Base Counts Overall T 10846938328 37.49 % 6436359488 46.21 % 4410578840 29.39 %
Base Counts Overall N 385478081 1.33 % 177456766 1.27 % 208021315 1.39 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.044808873028161535
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 107483291



Mapping Quality

Mapping Quality Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612373.51.mapq.png



Read Length

Read Length Reads
82 1474693
95 3557347
33 522772
80 1750524
66 1762617
98 30170177
23 407486
53 1556310
65 1754407
20 383342
97 25224717
27 398619
25 396983
76 1777632
34 523265
30 411525
49 1495278
59 1667911
86 1539076
51 1492614
79 1825033
50 1477548
89 3573317
71 1738545
41 1014009
62 1731430
67 1815078
44 1288716
37 709571
92 778262
60 1683836
31 464049
48 1443630
21 415098
22 370101
52 1549131
77 1821961
87 1795444
28 396611
70 1765459
74 1751364
42 1111012
90 8049287
78 1771496
69 1789756
56 1678641
39 871913
35 563700
96 6668810
84 1266312
40 921278
54 1614415
58 1671644
73 1715975
46 1412382
91 4594263
55 1663412
63 1698343
47 1471543
45 1333063
43 1201404
36 644050
83 1169639
29 408066
24 399828
61 1664208
64 1730111
32 428670
94 2232627
75 1801160
38 799695
26 426195
93 2324650
88 2389140
57 1707420
81 1620517
68 1767262
72 1756889
85 1393379
82 1426759
95 3693214
33 136191
80 1449102
99 57695176
66 1472534
98 20147361
23 46429
53 1275029
65 1476442
20 43740
97 8016444
27 77595
25 60023
76 1498477
34 191090
30 97605
49 1195516
59 1375104
86 1377945
51 1197931
79 1503605
50 1177288
89 1466513
71 1434905
41 721935
62 1437804
67 1532249
44 995309
37 428435
92 1442075
60 1400188
31 102022
48 1169631
21 42950
22 44865
52 1260437
77 1550762
87 1429386
28 87597
70 1475600
74 1471227
42 829949
90 1535319
78 1496081
69 1505933
56 1395283
39 573736
35 256449
96 7883935
84 1354212
40 643391
54 1333861
58 1387020
73 1427485
46 1122420
91 1502878
55 1384147
63 1415516
47 1188517
45 1078450
43 914605
36 339448
83 1332557
29 91641
24 53459
61 1373540
64 1451661
32 117533
94 1967196
75 1519079
38 506207
26 70287
93 1644575
88 1418055
57 1420417
81 1426319
68 1480425
72 1467302
85 1374265



Insert Size Plot

Insert Size Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612373.51.isize.png