/EXTERNAL DEEP/K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs/51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612411.51
BACK
SAMPLE K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs LANE 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612411.51
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 248332270 | 100.00 % | 124166135 | 100.00 % | 124166135 | 100.00 % |
| General Reads | 245797909 | 98.98 % | 123395968 | 99.38 % | 122401941 | 98.58 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3 | 0.00 % | 2 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2534358 | 1.02 % | 770165 | 0.62 % | 1764193 | 1.42 % |
| Bisulfite_reads C2T | 129126723 | 52.00 % | 64816100 | 52.20 % | 64310623 | 51.79 % |
| Bisulfite_reads G2A | 116671189 | 46.98 % | 58579870 | 47.18 % | 58091319 | 46.79 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 83927313 |
| Average Unique | 67.59 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 4835988051 | 38.30 % | 1777812729 | 29.11 % | 3058175322 | 46.90 % |
| Base Counts Overall C | 1460275925 | 11.56 % | 57630330 | 0.94 % | 1402645595 | 21.51 % |
| Base Counts Overall G | 1382895804 | 10.95 % | 1332078761 | 21.81 % | 50817043 | 0.78 % |
| Base Counts Overall T | 4700333799 | 37.22 % | 2815328747 | 46.10 % | 1885005052 | 28.91 % |
| Base Counts Overall N | 248652484 | 1.97 % | 124216090 | 2.03 % | 124436394 | 1.91 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 113804781 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 33 | 553004 |
| 50 | 8136305 |
| 38 | 512305 |
| 39 | 643074 |
| 35 | 456140 |
| 51 | 33686514 |
| 23 | 438205 |
| 20 | 407514 |
| 52 | 41622496 |
| 27 | 415261 |
| 42 | 2032106 |
| 25 | 419307 |
| 30 | 425058 |
| 34 | 524786 |
| 47 | 2335648 |
| 45 | 4892428 |
| 43 | 3702037 |
| 36 | 367159 |
| 31 | 481737 |
| 29 | 423597 |
| 24 | 426447 |
| 41 | 1179412 |
| 44 | 9224340 |
| 37 | 368232 |
| 32 | 443603 |
| 49 | 3968056 |
| 21 | 440350 |
| 26 | 447824 |
| 48 | 2607489 |
| 22 | 392931 |
| 40 | 885620 |
| 46 | 893389 |
| 28 | 413761 |
| 33 | 96515 |
| 50 | 8449227 |
| 38 | 357225 |
| 39 | 411836 |
| 35 | 187790 |
| 51 | 8000575 |
| 23 | 26892 |
| 53 | 71539376 |
| 20 | 23674 |
| 52 | 22747296 |
| 27 | 51096 |
| 42 | 624486 |
| 25 | 36700 |
| 30 | 67081 |
| 34 | 139332 |
| 47 | 1147132 |
| 45 | 919681 |
| 43 | 741888 |
| 36 | 245487 |
| 31 | 71037 |
| 29 | 63099 |
| 24 | 32268 |
| 41 | 528329 |
| 44 | 909531 |
| 37 | 303800 |
| 32 | 81811 |
| 49 | 3382545 |
| 21 | 23576 |
| 26 | 44729 |
| 48 | 1458062 |
| 22 | 25342 |
| 40 | 462799 |
| 46 | 906940 |
| 28 | 58978 |
Insert Size Plot
| Insert Size Histogram |
 |