/EXTERNAL DEEP/K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs/51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612462.51

BACK

SAMPLE K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs LANE 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612462.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 40554142 100.00 % 20277071 100.00 % 20277071 100.00 %
General Reads 36704246 90.51 % 18954764 93.48 % 17749482 87.53 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 140537 0.35 % 72812 0.36 % 67725 0.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3709359 9.15 % 1249495 6.16 % 2459864 12.13 %
Bisulfite_reads C2T 18921986 46.66 % 9758506 48.13 % 9163480 45.19 %
Bisulfite_reads G2A 17922797 44.19 % 9269070 45.71 % 8653727 42.68 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 11722619
Average Unique 57.81 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 1450279441 35.06 % 591768243 28.61 % 858511198 41.51 %
Base Counts Overall C 582617482 14.08 % 105950016 5.12 % 476667466 23.05 %
Base Counts Overall G 599146560 14.48 % 485416812 23.47 % 113729748 5.50 %
Base Counts Overall T 1406108831 33.99 % 860912531 41.62 % 545196300 26.36 %
Base Counts Overall N 98370170 2.38 % 24213640 1.17 % 74156530 3.59 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9458956698868797
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 14131928



Mapping Quality

Mapping Quality Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612462.51.mapq.png



Read Length

Read Length Reads
101 20277071
101 20277071



Insert Size Plot

Insert Size Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612462.51.isize.png