/EXTERNAL DEEP/K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs/51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612466.51

BACK

SAMPLE K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs LANE 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612466.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 41707922 100.00 % 20853961 100.00 % 20853961 100.00 %
General Reads 37220075 89.24 % 19377167 92.92 % 17842908 85.56 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 141274 0.34 % 73805 0.35 % 67469 0.32 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4346573 10.42 % 1402989 6.73 % 2943584 14.12 %
Bisulfite_reads C2T 19186542 46.00 % 9974132 47.83 % 9212410 44.18 %
Bisulfite_reads G2A 18174807 43.58 % 9476840 45.44 % 8697967 41.71 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 11605037
Average Unique 55.65 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 1486938007 34.95 % 610064474 28.68 % 876873533 41.22 %
Base Counts Overall C 600999385 14.13 % 109914740 5.17 % 491084645 23.09 %
Base Counts Overall G 612872002 14.41 % 496673604 23.35 % 116198398 5.46 %
Base Counts Overall T 1445602421 33.98 % 887699824 41.73 % 557902597 26.23 %
Base Counts Overall N 107796229 2.53 % 22751380 1.07 % 85044849 4.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.946460787753106
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 14082983



Mapping Quality

Mapping Quality Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612466.51.mapq.png



Read Length

Read Length Reads
101 20853961
101 20853961



Insert Size Plot

Insert Size Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612466.51.isize.png