/EXTERNAL DEEP/mapping_coverage/K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs
BACK
SAMPLE K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1190968825 |
100% |
82198120499 |
100% |
| Mapped |
1178009816 |
98.91 % |
81023449557 |
98.57 % |
| Passed |
613516635 |
51.51 % |
38056268541 |
46.30 % |
| NotPassed |
564493181 |
47.40 % |
42967181016 |
52.27 % |
| |
|
|
|
|
| LowMAPQ |
472360948 |
39.66 % |
34378097482 |
41.82 % |
| MateUnmapped |
12959009 |
1.09 % |
1145236852 |
1.39 % |
| Duplicate |
70157703 |
5.89 % |
6648740358 |
8.09 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
663200 |
0.06 % |
49892138 |
0.06 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21311330 |
1.79 % |
1890451038 |
2.30 % |
| Unmapped |
12959009 |
1.09 % |
1174670942 |
1.43 % |
Base Level Counts
| Bases |
# |
% |
| Total |
46858603858 |
100% |
| Passed |
35227248905 |
75.18 % |
| Trimmed |
2413182121 |
5.15 % |
| Clipped |
187370549 |
0.40 % |
| Overlapping |
8724425950 |
18.62 % |
| LowQuality |
306376333 |
0.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |