/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612149.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612149.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 78450088 | 100.00 % | 39225044 | 100.00 % | 39225044 | 100.00 % |
| General Reads | 73126956 | 93.21 % | 36629863 | 93.38 % | 36497093 | 93.05 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1846 | 0.00 % | 927 | 0.00 % | 919 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5321286 | 6.78 % | 2594254 | 6.61 % | 2727032 | 6.95 % |
| Bisulfite_reads C2T | 37444389 | 47.73 % | 18738382 | 47.77 % | 18706007 | 47.69 % |
| Bisulfite_reads G2A | 35684413 | 45.49 % | 17892408 | 45.61 % | 17792005 | 45.36 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 20864972 |
| Average Unique | 53.19 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3118975833 | 38.98 % | 1304277511 | 32.60 % | 1814698322 | 45.36 % |
| Base Counts Overall C | 876754306 | 10.96 % | 61946067 | 1.55 % | 814808239 | 20.37 % |
| Base Counts Overall G | 835219202 | 10.44 % | 785902531 | 19.64 % | 49316671 | 1.23 % |
| Base Counts Overall T | 3077926202 | 38.46 % | 1807951249 | 45.19 % | 1269974953 | 31.74 % |
| Base Counts Overall N | 93033433 | 1.16 % | 40877130 | 1.02 % | 52156303 | 1.30 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9300387644566774 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 25529775 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 39225044 |
| 101 | 39225044 |
Insert Size Plot
| Insert Size Histogram |
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