/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612160.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612160.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 112113704 | 100.00 % | 56056852 | 100.00 % | 56056852 | 100.00 % |
| General Reads | 110381816 | 98.46 % | 55534512 | 99.07 % | 54847304 | 97.84 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 190765 | 0.17 % | 96102 | 0.17 % | 94663 | 0.17 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1541123 | 1.37 % | 426238 | 0.76 % | 1114885 | 1.99 % |
| Bisulfite_reads C2T | 56883001 | 50.74 % | 28610122 | 51.04 % | 28272879 | 50.44 % |
| Bisulfite_reads G2A | 53689580 | 47.89 % | 27020492 | 48.20 % | 26669088 | 47.58 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 43078166 |
| Average Unique | 76.85 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 4393017568 | 38.42 % | 1716695395 | 30.02 % | 2676322173 | 46.81 % |
| Base Counts Overall C | 1282940981 | 11.22 % | 49946383 | 0.87 % | 1232994598 | 21.56 % |
| Base Counts Overall G | 1307257822 | 11.43 % | 1267357604 | 22.17 % | 39900218 | 0.70 % |
| Base Counts Overall T | 4331410495 | 37.88 % | 2627447848 | 45.95 % | 1703962647 | 29.80 % |
| Base Counts Overall N | 120970942 | 1.06 % | 56351674 | 0.99 % | 64619268 | 1.13 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.994705036532508 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 51073237 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 56056852 |
| 101 | 56056852 |
Insert Size Plot
| Insert Size Histogram |
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