/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612232.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612232.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 81098826 | 100.00 % | 40549413 | 100.00 % | 40549413 | 100.00 % |
| General Reads | 76450727 | 94.27 % | 38513683 | 94.98 % | 37937044 | 93.56 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1767 | 0.00 % | 885 | 0.00 % | 882 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4646332 | 5.73 % | 2034845 | 5.02 % | 2611487 | 6.44 % |
| Bisulfite_reads C2T | 39197824 | 48.33 % | 19728221 | 48.65 % | 19469603 | 48.01 % |
| Bisulfite_reads G2A | 37254670 | 45.94 % | 18786347 | 46.33 % | 18468323 | 45.55 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 22157716 |
| Average Unique | 54.64 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3228298784 | 39.03 % | 1347517576 | 32.58 % | 1880781208 | 45.47 % |
| Base Counts Overall C | 900053600 | 10.88 % | 62822281 | 1.52 % | 837231319 | 20.24 % |
| Base Counts Overall G | 880700987 | 10.65 % | 827248783 | 20.00 % | 53452204 | 1.29 % |
| Base Counts Overall T | 3169902914 | 38.32 % | 1856917343 | 44.90 % | 1312985571 | 31.74 % |
| Base Counts Overall N | 93123967 | 1.13 % | 41534143 | 1.00 % | 51589824 | 1.25 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9948232974265344 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 27162215 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 40549413 |
| 101 | 40549413 |
Insert Size Plot
| Insert Size Histogram |
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