/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612287.41

BACK

SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612287.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 77692892 100.00 % 38846446 100.00 % 38846446 100.00 %
General Reads 73112532 94.10 % 36991477 95.22 % 36121055 92.98 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1665 0.00 % 838 0.00 % 827 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4578695 5.89 % 1854131 4.77 % 2724564 7.01 %
Bisulfite_reads C2T 37453678 48.21 % 18928919 48.73 % 18524759 47.69 %
Bisulfite_reads G2A 35660519 45.90 % 18063396 46.50 % 17597123 45.30 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 20986640
Average Unique 54.02 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3100681064 39.13 % 1293710571 32.65 % 1806970493 45.60 %
Base Counts Overall C 857454458 10.82 % 57497975 1.45 % 799956483 20.19 %
Base Counts Overall G 833643038 10.52 % 785208813 19.82 % 48434225 1.22 %
Base Counts Overall T 3046016854 38.44 % 1786393909 45.08 % 1259622945 31.79 %
Base Counts Overall N 86879570 1.10 % 39526224 1.00 % 47353346 1.20 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9925549907669778
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 25702678



Mapping Quality

Mapping Quality Histogram
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612287.41.mapq.png



Read Length

Read Length Reads
101 38846446
101 38846446



Insert Size Plot

Insert Size Histogram
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612287.41.isize.png