/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612310.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612310.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 84996406 | 100.00 % | 42498203 | 100.00 % | 42498203 | 100.00 % |
| General Reads | 79605679 | 93.66 % | 40098501 | 94.35 % | 39507178 | 92.96 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2066 | 0.00 % | 1047 | 0.00 % | 1019 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5388661 | 6.34 % | 2398655 | 5.64 % | 2990006 | 7.04 % |
| Bisulfite_reads C2T | 40808474 | 48.01 % | 20532118 | 48.31 % | 20276356 | 47.71 % |
| Bisulfite_reads G2A | 38799271 | 45.65 % | 19567430 | 46.04 % | 19231841 | 45.25 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 23163277 |
| Average Unique | 54.50 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3363659316 | 38.80 % | 1407123683 | 32.46 % | 1956535633 | 45.14 % |
| Base Counts Overall C | 962252535 | 11.10 % | 74214669 | 1.71 % | 888037866 | 20.49 % |
| Base Counts Overall G | 930560137 | 10.73 % | 875314724 | 20.19 % | 55245413 | 1.27 % |
| Base Counts Overall T | 3308808334 | 38.17 % | 1932114786 | 44.57 % | 1376693548 | 31.76 % |
| Base Counts Overall N | 104353090 | 1.20 % | 46048844 | 1.06 % | 58304246 | 1.35 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9467547766431484 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 28310640 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 42498203 |
| 101 | 42498203 |
Insert Size Plot
| Insert Size Histogram |
 |