/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612333.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612333.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 82953748 | 100.00 % | 41476874 | 100.00 % | 41476874 | 100.00 % |
| General Reads | 77895943 | 93.90 % | 39174939 | 94.45 % | 38721004 | 93.36 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1907 | 0.00 % | 959 | 0.00 % | 948 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5055898 | 6.09 % | 2300976 | 5.55 % | 2754922 | 6.64 % |
| Bisulfite_reads C2T | 39962869 | 48.17 % | 20081863 | 48.42 % | 19881006 | 47.93 % |
| Bisulfite_reads G2A | 37934981 | 45.73 % | 19094035 | 46.04 % | 18840946 | 45.43 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 22418809 |
| Average Unique | 54.05 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3297718808 | 38.97 % | 1389885056 | 32.85 % | 1907833752 | 45.10 % |
| Base Counts Overall C | 927456174 | 10.96 % | 73903249 | 1.75 % | 853552925 | 20.18 % |
| Base Counts Overall G | 924183629 | 10.92 % | 851744885 | 20.13 % | 72438744 | 1.71 % |
| Base Counts Overall T | 3218323907 | 38.04 % | 1873172227 | 44.28 % | 1345151680 | 31.80 % |
| Base Counts Overall N | 93599778 | 1.11 % | 41935731 | 0.99 % | 51664047 | 1.22 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9944285334976662 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 27573084 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 41476874 |
| 101 | 41476874 |
Insert Size Plot
| Insert Size Histogram |
 |