/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612338.41

BACK

SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612338.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 163785974 100.00 % 81892987 100.00 % 81892987 100.00 %
General Reads 155626290 95.02 % 77906891 95.13 % 77719399 94.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 1 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8159681 4.98 % 3986095 4.87 % 4173586 5.10 %
Bisulfite_reads C2T 79215943 48.37 % 39653835 48.42 % 39562108 48.31 %
Bisulfite_reads G2A 76410350 46.65 % 38253057 46.71 % 38157293 46.59 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 59012083
Average Unique 72.06 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 5661497027 37.07 % 2082285297 28.51 % 3579211730 44.93 %
Base Counts Overall C 2106342022 13.79 % 229502595 3.14 % 1876839427 23.56 %
Base Counts Overall G 2071257365 13.56 % 1822157702 24.94 % 249099663 3.13 %
Base Counts Overall T 5267227542 34.49 % 3089080814 42.29 % 2178146728 27.34 %
Base Counts Overall N 164398321 1.08 % 81901611 1.12 % 82496710 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 70015037



Mapping Quality

Mapping Quality Histogram
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612338.41.mapq.png



Read Length

Read Length Reads
40 205696
96 4952651
31 196455
55 208495
52 208106
66 234365
23 195286
74 435158
91 2144567
42 212397
53 205613
84 186399
39 199449
28 198508
38 204255
50 210868
68 284484
72 296063
46 203256
30 194192
83 136310
85 249926
21 202890
27 198664
77 345012
41 205733
37 199969
62 216510
89 1925803
93 1160315
64 224860
95 2291918
29 196599
25 216966
35 196089
71 319767
87 538095
65 235398
47 202252
92 623566
56 213236
94 1509622
60 235735
80 243259
69 285525
54 211248
98 25320365
67 266183
59 243032
61 227006
36 200291
63 217754
58 230658
43 218927
90 4404387
49 208366
33 200530
78 294413
81 203057
86 374679
76 390753
75 434842
48 208487
20 205112
70 288041
22 195224
32 198721
79 264394
24 216160
57 218315
34 195135
82 142963
51 212079
44 215266
73 424952
26 202664
97 20268432
88 1034698
45 205571
40 40597
96 5315768
31 31491
55 40340
52 38336
66 134967
23 18953
74 71581
91 264203
42 38466
99 47017019
53 38843
84 78785
39 36343
28 24630
38 30996
50 38161
68 266628
72 110814
46 46712
30 27097
83 74462
85 84945
21 19043
27 23184
77 63638
41 47172
37 30024
62 75857
89 183690
93 421916
64 103073
95 1961966
29 24765
25 21582
35 34312
71 163642
87 110096
65 109740
47 46799
92 256882
56 42667
94 713998
60 45440
80 67129
69 283971
54 39891
98 15284361
67 177145
59 44437
61 54794
36 29877
63 101425
58 44291
43 36188
90 281177
49 39997
33 33468
78 64087
81 68571
86 94904
76 63997
75 65400
48 44832
20 18925
70 228487
22 19454
32 33124
79 65241
24 19472
57 42902
34 34939
82 71105
51 36799
44 38887
73 83432
26 21922
97 5707198
88 139004
45 42531



Insert Size Plot

Insert Size Histogram
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612338.41.isize.png