/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612351.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612351.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 110058600 | 100.00 % | 55029300 | 100.00 % | 55029300 | 100.00 % |
| General Reads | 108323771 | 98.42 % | 54496597 | 99.03 % | 53827174 | 97.82 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 187954 | 0.17 % | 94656 | 0.17 % | 93298 | 0.17 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1546875 | 1.41 % | 438047 | 0.80 % | 1108828 | 2.01 % |
| Bisulfite_reads C2T | 55852613 | 50.75 % | 28090063 | 51.05 % | 27762550 | 50.45 % |
| Bisulfite_reads G2A | 52659112 | 47.85 % | 26501190 | 48.16 % | 26157922 | 47.53 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 42211560 |
| Average Unique | 76.71 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 4308982429 | 38.38 % | 1684665921 | 30.01 % | 2624316508 | 46.75 % |
| Base Counts Overall C | 1265176785 | 11.27 % | 49816183 | 0.89 % | 1215360602 | 21.65 % |
| Base Counts Overall G | 1287467270 | 11.47 % | 1247897274 | 22.23 % | 39569996 | 0.70 % |
| Base Counts Overall T | 4247971550 | 37.84 % | 2575405598 | 45.88 % | 1672565952 | 29.80 % |
| Base Counts Overall N | 116379166 | 1.04 % | 55203624 | 0.98 % | 61175542 | 1.09 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9946001139766967 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 50114241 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 55029300 |
| 101 | 55029300 |
Insert Size Plot
| Insert Size Histogram |
 |