/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612392.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612392.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 70186278 | 100.00 % | 35093139 | 100.00 % | 35093139 | 100.00 % |
| General Reads | 66064512 | 94.13 % | 33261533 | 94.78 % | 32802979 | 93.47 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1497 | 0.00 % | 752 | 0.00 % | 745 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4120269 | 5.87 % | 1830854 | 5.22 % | 2289415 | 6.52 % |
| Bisulfite_reads C2T | 33847519 | 48.23 % | 17026493 | 48.52 % | 16821026 | 47.93 % |
| Bisulfite_reads G2A | 32218490 | 45.90 % | 16235792 | 46.26 % | 15982698 | 45.54 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 18981859 |
| Average Unique | 54.09 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2800089468 | 39.11 % | 1169002655 | 32.66 % | 1631086813 | 45.57 % |
| Base Counts Overall C | 774510369 | 10.82 % | 52417845 | 1.46 % | 722092524 | 20.17 % |
| Base Counts Overall G | 751342152 | 10.50 % | 707823624 | 19.77 % | 43518528 | 1.22 % |
| Base Counts Overall T | 2751779904 | 38.44 % | 1613884849 | 45.09 % | 1137895055 | 31.79 % |
| Base Counts Overall N | 81278463 | 1.14 % | 36371205 | 1.02 % | 44907258 | 1.25 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9951224886753693 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 23266835 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 35093139 |
| 101 | 35093139 |
Insert Size Plot
| Insert Size Histogram |
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