/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612431.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612431.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 112108264 | 100.00 % | 56054132 | 100.00 % | 56054132 | 100.00 % |
| General Reads | 110422494 | 98.50 % | 55521225 | 99.05 % | 54901269 | 97.94 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 189118 | 0.17 % | 95234 | 0.17 % | 93884 | 0.17 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1496652 | 1.34 % | 437673 | 0.78 % | 1058979 | 1.89 % |
| Bisulfite_reads C2T | 56902182 | 50.76 % | 28602671 | 51.03 % | 28299511 | 50.49 % |
| Bisulfite_reads G2A | 53709430 | 47.91 % | 27013788 | 48.19 % | 26695642 | 47.62 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 43128447 |
| Average Unique | 76.94 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 4390285154 | 38.39 % | 1716122960 | 30.02 % | 2674162194 | 46.77 % |
| Base Counts Overall C | 1286818905 | 11.25 % | 50437657 | 0.88 % | 1236381248 | 21.62 % |
| Base Counts Overall G | 1306367954 | 11.42 % | 1267236817 | 22.16 % | 39131137 | 0.68 % |
| Base Counts Overall T | 4333645567 | 37.90 % | 2627392667 | 45.95 % | 1706252900 | 29.84 % |
| Base Counts Overall N | 117925348 | 1.03 % | 56331363 | 0.99 % | 61593985 | 1.08 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9947118597615864 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 51125629 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 56054132 |
| 101 | 56054132 |
Insert Size Plot
| Insert Size Histogram |
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