/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs

BACK

SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1659719660 100.00 % 829859830 100.00 % 829859830 100.00 %
General Reads 1582549358 95.35 % 794909983 95.79 % 787639375 94.91 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 772920 0.05 % 389268 0.05 % 383652 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 76397382 4.60 % 34560579 4.16 % 41836803 5.04 %
Bisulfite_reads C2T 810810393 48.85 % 407066006 49.05 % 403744387 48.65 %
Bisulfite_reads G2A 772511885 46.54 % 388233245 46.78 % 384278640 46.31 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 542377144
Average Unique 65.36 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 63173543721 38.28 % 25111081611 30.79 % 38062462110 45.59 %
Base Counts Overall C 19520090745 11.83 % 1490938074 1.83 % 18029152671 21.59 %
Base Counts Overall G 19304220983 11.70 % 17882864297 21.93 % 1421356686 1.70 %
Base Counts Overall T 61248407595 37.11 % 36229364806 44.42 % 25019042789 29.97 %
Base Counts Overall N 1805145948 1.09 % 845407524 1.04 % 959738424 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9942642442734205
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 651414647



Mapping Quality

Mapping Quality Histogram
K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612338.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612345.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612309.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612160.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612438.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612351.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612434.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612149.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612287.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612232.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612333.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612299.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612206.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612392.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612310.41
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612431.41