/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612158.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612158.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 164801788 | 100.00 % | 82400894 | 100.00 % | 82400894 | 100.00 % |
| General Reads | 161525899 | 98.01 % | 81260352 | 98.62 % | 80265547 | 97.41 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 379856 | 0.23 % | 191452 | 0.23 % | 188404 | 0.23 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2896033 | 1.76 % | 949090 | 1.15 % | 1946943 | 2.36 % |
| Bisulfite_reads C2T | 82640251 | 50.15 % | 41558643 | 50.43 % | 41081608 | 49.86 % |
| Bisulfite_reads G2A | 79265504 | 48.10 % | 39893161 | 48.41 % | 39372343 | 47.78 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 61536797 |
| Average Unique | 74.68 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 6449954135 | 38.37 % | 2537516963 | 30.19 % | 3912437172 | 46.55 % |
| Base Counts Overall C | 1889007527 | 11.24 % | 80404973 | 0.96 % | 1808602554 | 21.52 % |
| Base Counts Overall G | 1912328319 | 11.38 % | 1852175809 | 22.04 % | 60152510 | 0.72 % |
| Base Counts Overall T | 6384216134 | 37.98 % | 3852218749 | 45.83 % | 2531997385 | 30.13 % |
| Base Counts Overall N | 174276261 | 1.04 % | 82574694 | 0.98 % | 91701567 | 1.09 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9944938887728105 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 72801359 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 82400894 |
| 101 | 82400894 |
Insert Size Plot
| Insert Size Histogram |
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