/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612165.41

BACK

SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612165.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 55301932 100.00 % 27650966 100.00 % 27650966 100.00 %
General Reads 52013082 94.05 % 26138692 94.53 % 25874390 93.57 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1953 0.00 % 984 0.00 % 969 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3286897 5.94 % 1511290 5.47 % 1775607 6.42 %
Bisulfite_reads C2T 26557639 48.02 % 13338270 48.24 % 13219369 47.81 %
Bisulfite_reads G2A 25457396 46.03 % 12801406 46.30 % 12655990 45.77 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 16400208
Average Unique 59.31 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2202581326 39.05 % 899605483 31.90 % 1302975843 46.20 %
Base Counts Overall C 614402490 10.89 % 45086577 1.60 % 569315913 20.19 %
Base Counts Overall G 604336576 10.71 % 564429451 20.01 % 39907125 1.41 %
Base Counts Overall T 2155791054 38.22 % 1282984897 45.49 % 872806157 30.95 %
Base Counts Overall N 63685618 1.13 % 28292124 1.00 % 35393494 1.25 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9946516953090945
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 19812932



Mapping Quality

Mapping Quality Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612165.41.mapq.png



Read Length

Read Length Reads
101 27650966
101 27650966



Insert Size Plot

Insert Size Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612165.41.isize.png