/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612205.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612205.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 61924376 | 100.00 % | 30962188 | 100.00 % | 30962188 | 100.00 % |
| General Reads | 57569754 | 92.97 % | 28802043 | 93.02 % | 28767711 | 92.91 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2340 | 0.00 % | 1170 | 0.00 % | 1170 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4352282 | 7.03 % | 2158975 | 6.97 % | 2193307 | 7.08 % |
| Bisulfite_reads C2T | 29420593 | 47.51 % | 14714661 | 47.52 % | 14705932 | 47.50 % |
| Bisulfite_reads G2A | 28151501 | 45.46 % | 14088552 | 45.50 % | 14062949 | 45.42 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 18031492 |
| Average Unique | 58.24 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2459228626 | 38.93 % | 1015207424 | 32.15 % | 1444021202 | 45.72 % |
| Base Counts Overall C | 696576733 | 11.03 % | 59213221 | 1.87 % | 637363512 | 20.18 % |
| Base Counts Overall G | 692120139 | 10.96 % | 631831123 | 20.01 % | 60289016 | 1.91 % |
| Base Counts Overall T | 2400086625 | 38.00 % | 1420731401 | 44.99 % | 979355224 | 31.01 % |
| Base Counts Overall N | 68274229 | 1.08 % | 31160007 | 0.99 % | 37114222 | 1.18 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9942888363201376 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 21890738 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 30962188 |
| 101 | 30962188 |
Insert Size Plot
| Insert Size Histogram |
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