/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612242.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612242.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 59625698 | 100.00 % | 29812849 | 100.00 % | 29812849 | 100.00 % |
| General Reads | 55691130 | 93.40 % | 27887029 | 93.54 % | 27804101 | 93.26 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2294 | 0.00 % | 1155 | 0.00 % | 1139 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3932274 | 6.59 % | 1924665 | 6.46 % | 2007609 | 6.73 % |
| Bisulfite_reads C2T | 28447182 | 47.71 % | 14238471 | 47.76 % | 14208711 | 47.66 % |
| Bisulfite_reads G2A | 27246242 | 45.70 % | 13649713 | 45.78 % | 13596529 | 45.61 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 17466109 |
| Average Unique | 58.59 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2375329847 | 39.06 % | 970047862 | 31.90 % | 1405281985 | 46.21 % |
| Base Counts Overall C | 664328677 | 10.92 % | 49656917 | 1.63 % | 614671760 | 20.21 % |
| Base Counts Overall G | 649604078 | 10.68 % | 606025856 | 19.93 % | 43578222 | 1.43 % |
| Base Counts Overall T | 2325329096 | 38.23 % | 1384714975 | 45.54 % | 940614121 | 30.93 % |
| Base Counts Overall N | 67229498 | 1.11 % | 30464988 | 1.00 % | 36764510 | 1.21 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9949997679503766 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 21165652 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 29812849 |
| 101 | 29812849 |
Insert Size Plot
| Insert Size Histogram |
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