/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612251.41

BACK

SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612251.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 147020870 100.00 % 73510435 100.00 % 73510435 100.00 %
General Reads 141449569 96.21 % 70820454 96.34 % 70629115 96.08 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 1 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5571298 3.79 % 2689980 3.66 % 2881318 3.92 %
Bisulfite_reads C2T 71121515 48.38 % 35607039 48.44 % 35514476 48.31 %
Bisulfite_reads G2A 70328057 47.84 % 35213416 47.90 % 35114641 47.77 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 53517642
Average Unique 72.80 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 5062712058 36.79 % 1857202822 28.18 % 3205509236 44.69 %
Base Counts Overall C 1920767661 13.96 % 185032108 2.81 % 1735735553 24.20 %
Base Counts Overall G 1894899146 13.77 % 1686695849 25.59 % 208203297 2.90 %
Base Counts Overall T 4735366158 34.41 % 2786965384 42.29 % 1948400774 27.17 %
Base Counts Overall N 148487253 1.08 % 74367947 1.13 % 74119306 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 63817158



Mapping Quality

Mapping Quality Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612251.41.mapq.png



Read Length

Read Length Reads
78 232782
41 178030
27 170024
33 170395
39 170404
51 181829
52 180682
83 112818
80 202399
72 229499
89 1712760
70 228580
60 211317
55 181787
23 168393
69 230007
66 195810
58 211163
88 907711
95 2123494
73 299588
30 166230
59 220874
22 167742
68 226951
31 168487
35 169723
26 174738
79 219266
25 185451
98 23237375
43 190912
96 4641202
57 192706
49 178751
97 18405753
74 315996
82 118011
42 183987
81 170071
24 187838
67 214781
85 216434
91 1923798
77 265236
50 183865
36 173213
44 188011
76 295631
65 196800
53 178369
38 175525
54 185087
29 168137
37 170464
94 1436896
93 1036447
71 247037
32 168423
86 324718
48 177012
87 465248
75 321930
47 173488
62 187430
63 186093
34 167355
40 173927
92 555795
64 191746
90 3918098
21 174992
45 177972
84 158964
46 175429
20 178101
61 199076
28 171390
56 185981
78 54305
41 34205
27 18467
33 25428
39 28350
51 30236
52 31605
83 62615
80 55588
72 78880
89 160216
70 161253
60 38940
55 33811
23 15032
69 178560
66 94604
58 37312
88 121499
95 1727577
73 62738
30 21470
59 37586
22 15277
68 159397
31 23642
35 26072
26 17843
79 55121
25 16763
98 14131413
43 29753
96 4847051
57 35433
49 32635
97 5165487
74 56758
82 58596
42 28469
81 57426
24 15578
67 123023
85 71304
91 233043
77 52509
50 31626
36 24215
44 31590
76 51989
65 79322
99 42377471
53 32644
38 25379
54 33073
29 19984
37 24193
94 622361
93 361353
71 107808
32 25540
86 79911
48 35719
87 92090
75 52912
47 36997
62 57147
63 72167
34 26094
40 31082
92 217152
64 75435
90 255074
21 14656
45 34525
84 65921
46 37477
20 14924
61 44027
28 19856
56 35851



Insert Size Plot

Insert Size Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612251.41.isize.png