/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612252.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612252.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 163312804 | 100.00 % | 81656402 | 100.00 % | 81656402 | 100.00 % |
| General Reads | 160058054 | 98.01 % | 80560854 | 98.66 % | 79497200 | 97.36 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 378749 | 0.23 % | 190964 | 0.23 % | 187785 | 0.23 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2876001 | 1.76 % | 904584 | 1.11 % | 1971417 | 2.41 % |
| Bisulfite_reads C2T | 81929343 | 50.17 % | 41220401 | 50.48 % | 40708942 | 49.85 % |
| Bisulfite_reads G2A | 78507460 | 48.07 % | 39531417 | 48.41 % | 38976043 | 47.73 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 60947123 |
| Average Unique | 74.64 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 6391994936 | 38.37 % | 2516730355 | 30.22 % | 3875264581 | 46.53 % |
| Base Counts Overall C | 1874717216 | 11.25 % | 78469582 | 0.94 % | 1796247634 | 21.57 % |
| Base Counts Overall G | 1900552456 | 11.41 % | 1837789907 | 22.07 % | 62762549 | 0.75 % |
| Base Counts Overall T | 6318034377 | 37.93 % | 3814045276 | 45.79 % | 2503989101 | 30.06 % |
| Base Counts Overall N | 172607023 | 1.04 % | 81917884 | 0.98 % | 90689139 | 1.09 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9945484202309798 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 72149477 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 81656402 |
| 101 | 81656402 |
Insert Size Plot
| Insert Size Histogram |
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