/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612274.41

BACK

SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612274.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 149987420 100.00 % 74993710 100.00 % 74993710 100.00 %
General Reads 144445532 96.31 % 72321235 96.44 % 72124297 96.17 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1 0.00 % 0 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5541887 3.69 % 2672475 3.56 % 2869412 3.83 %
Bisulfite_reads C2T 72662650 48.45 % 36379744 48.51 % 36282906 48.38 %
Bisulfite_reads G2A 71782883 47.86 % 35941491 47.93 % 35841392 47.79 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 54787628
Average Unique 73.06 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 5176550862 36.90 % 1898254229 28.29 % 3278296633 44.81 %
Base Counts Overall C 1946295682 13.87 % 185545158 2.76 % 1760750524 24.07 %
Base Counts Overall G 1916811543 13.66 % 1709207787 25.47 % 207603756 2.84 %
Base Counts Overall T 4837156505 34.48 % 2842980055 42.36 % 1994176450 27.26 %
Base Counts Overall N 150554366 1.07 % 75001640 1.12 % 75552726 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 65278455



Mapping Quality

Mapping Quality Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612274.41.mapq.png



Read Length

Read Length Reads
78 238710
41 183989
27 178249
33 179711
39 179600
51 189169
52 187287
83 119969
80 209610
72 237093
89 1765678
70 236971
60 218456
55 188609
23 177323
69 235829
66 204589
58 217629
88 942620
95 2193379
73 314873
30 172980
59 227824
22 175089
68 234674
31 176499
35 176829
26 184032
79 222751
25 194262
98 23372093
43 198016
96 4703105
57 199815
49 185797
97 18777579
74 321388
82 124385
42 190877
81 176757
24 196435
67 223335
85 225992
91 1964276
77 270871
50 190644
36 179564
44 195523
76 302111
65 204298
53 184344
38 183577
54 191907
29 176096
37 179124
94 1474814
93 1066988
71 253736
32 176242
86 341478
48 184432
87 488303
75 328063
47 180644
62 194720
63 194740
34 174990
40 183712
92 572709
64 198879
90 4019058
21 182960
45 184097
84 166717
46 181986
20 184153
61 206979
28 178774
56 192344
78 55301
41 35982
27 18479
33 25827
39 29297
51 31399
52 32872
83 65036
80 58278
72 79756
89 163626
70 145706
60 38855
55 35080
23 15337
69 178041
66 95597
58 38636
88 126150
95 1792207
73 64269
30 21727
59 38213
22 15681
68 168839
31 24156
35 26595
26 18568
79 56616
25 17401
98 14341001
43 30508
96 4963444
57 36707
49 33292
97 5336586
74 57524
82 61379
42 30549
81 60098
24 16270
67 119268
85 74827
91 237606
77 54813
50 32419
36 24860
44 32433
76 54087
65 80868
99 43168095
53 33055
38 25729
54 34051
29 20307
37 25359
94 646677
93 378535
71 109369
32 26029
86 83182
48 36255
87 97363
75 54279
47 38079
62 58315
63 73019
34 26946
40 32512
92 225844
64 74804
90 259032
21 15428
45 35173
84 69544
46 37908
20 15257
61 44722
28 20372
56 36404



Insert Size Plot

Insert Size Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612274.41.isize.png