/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612308.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612308.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 63123168 | 100.00 % | 31561584 | 100.00 % | 31561584 | 100.00 % |
| General Reads | 59100235 | 93.63 % | 29623706 | 93.86 % | 29476529 | 93.39 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2225 | 0.00 % | 1117 | 0.00 % | 1108 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4020708 | 6.37 % | 1936761 | 6.14 % | 2083947 | 6.60 % |
| Bisulfite_reads C2T | 30204943 | 47.85 % | 15136355 | 47.96 % | 15068588 | 47.74 % |
| Bisulfite_reads G2A | 28897517 | 45.78 % | 14488468 | 45.91 % | 14409049 | 45.65 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 18598890 |
| Average Unique | 58.93 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2508233018 | 38.96 % | 1035654156 | 32.17 % | 1472578862 | 45.74 % |
| Base Counts Overall C | 708412185 | 11.00 % | 59871844 | 1.86 % | 648540341 | 20.15 % |
| Base Counts Overall G | 710338722 | 11.03 % | 649149499 | 20.16 % | 61189223 | 1.90 % |
| Base Counts Overall T | 2441255404 | 37.92 % | 1442730670 | 44.82 % | 998524734 | 31.02 % |
| Base Counts Overall N | 70323807 | 1.09 % | 31875399 | 0.99 % | 38448408 | 1.19 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9955090715402599 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 22535230 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 31561584 |
| 101 | 31561584 |
Insert Size Plot
| Insert Size Histogram |
 |